Nipoppy
Nipoppy is a command line tool to manage a complete neuroimaging processing workflow. Nipoppy will organize and convert raw data, process it with existing or custom pipelines, and extract derived data for further statistical modeling and analysis.
Development status
Nipoppy is complete as a system and is actively maintained. Not all commonly-used pipelines are available out of the box.
Innovation
Nipoppy is the first end-to-end tool for neuroimaging analysis, integrating other ReproNim tools. To achieve this, Nipoppy addressed gaps in the existing tools. By having identified and create ad-hoc solutions to these gaps, Nipoppy has created a road map for further development of existing tools and standards.
Citation information
Requisite knowledge to use
- Command line familiarity
Requisite technical requirements
- Python or conda
- Docker
Links
- Home page: https://nipoppy.readthedocs.io/en/stable/
- Tutorial: https://nipoppy.readthedocs.io/en/stable/quickstart.html
- Installation: https://nipoppy.readthedocs.io/en/stable/installation.html
- Full documentation: https://nipoppy.readthedocs.io/en/stable/user_guide/index.html
- Testimonial: https://www.linkedin.com/posts/evavanheese789_you-only-realise-how-important-infrastructure-activity-7220000830463053828-QdDy