Neurodocker
Neurodocker is a command line program for generating Dockerfiles and Singularity recipes for neuroimaging software.
Development status
Neurodocker is production software and is actively maintained.
Innovation
While the use of containers is desirable, containerization of tools can be difficult in practice. By abstracting away the details of creating container images, Neurodocker makes containers more accessible and lowers the barrier to their use.
Citation information
Remi Gau, Jakub Kaczmarzyk, Satrajit Ghosh, Steffen Bollmann, Yaroslav Halchenko, Mathias Goncalves, Matteo Visconti di Oleggio Castello, Dorota Jarecka, Paul Wighton, Michael Notter, Chris Markiewicz, Dylan Nielson, Ghislain Vaillant, araikes, Tom Close, Sooyoung Ahn, Ross Mitchell, Matt Cieslak, Joshua Scarsbrook, … James Kent. (2024). ReproNim/neurodocker: 1.0.1 (1.0.1). Zenodo. https://doi.org/10.5281/zenodo.12675111
Requisite knowledge to use
- Command line familiarity
- Docker or Singularity familiarity
Requisite technical requirements
- Linux / macOS
- Python 3.8-3.12
- Docker or Singularity
Links
- Home page: https://www.repronim.org/neurodocker/
- Tutorial: https://miykael.github.io/nipype_tutorial/notebooks/introduction_neurodocker.html
- Installation: https://www.repronim.org/neurodocker/user_guide/installation.html
- Full documentation: https://www.repronim.org/neurodocker/index.html
- How to get help: https://neurostars.org/tag/neurodocker